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NoryiE
2025-02-16 14:12:49 +00:00
parent c6a89e5b35
commit e0aeb9b06e
2737 changed files with 5220 additions and 1039045 deletions
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299
node_modules/shiki/languages/nextflow.tmLanguage.json generated vendored
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@@ -1,299 +0,0 @@
{
"$schema": "https://raw.githubusercontent.com/martinring/tmlanguage/master/tmlanguage.json",
"name": "nextflow",
"scopeName": "source.nextflow",
"keyEquivalent": "^~N",
"patterns": [
{
"include": "#nfl-rules"
}
],
"repository": {
"nfl-rules": {
"patterns": [
{
"include": "#process-def"
},
{
"include": "#workflow-def"
},
{
"include": "#code-block"
},
{
"include": "#include-statement"
},
{
"include": "#implicit-variables"
},
{
"comment": "method call and parens",
"begin": "(\\w*\\()",
"beginCaptures": {
"1": {
"patterns": [
{
"include": "source.nextflow-groovy"
}
]
}
},
"end": "\\)",
"patterns": [
{
"include": "#nfl-rules"
}
]
},
{
"comment": "braces",
"begin": "{",
"end": "}",
"patterns": [
{
"include": "#nfl-rules"
}
]
},
{
"include": "source.nextflow-groovy"
}
]
},
"process-def": {
"name": "process.nextflow",
"begin": "^\\s*(process)\\s+(\\w+|\"[^\"]+\"|'[^']+')\\s*{",
"beginCaptures": {
"1": {
"name": "keyword.nextflow"
},
"2": {
"name": "function.nextflow"
}
},
"end": "}",
"patterns": [
{
"include": "#process-body"
}
]
},
"process-body": {
"patterns": [
{
"name": "entity.name.function.nextflow",
"match": "(?:accelerator|afterScript|beforeScript|cache|cpus|conda|container|containerOptions|clusterOptions|debug|disk|echo|errorStrategy|executor|ext|label|machineType|maxErrors|maxForks|maxRetries|memory|module|penv|pod|publishDir|queue|resourceLabels|scratch|stageInMode|stageOutMode|storeDir|tag|time)\\b"
},
{
"name": "constant.block.nextflow",
"match": "(?:input|output|when|script|shell|exec):"
},
{
"name": "entity.name.function.nextflow",
"match": "\\b(tuple|set|path|file|val|stdout)(\\(|\\s)"
},
{
"include": "#implicit-variables"
},
{
"comment": "method call and parens",
"begin": "(\\w*\\()",
"beginCaptures": {
"1": {
"patterns": [
{
"include": "source.nextflow-groovy"
}
]
}
},
"end": "\\)",
"patterns": [
{
"include": "#process-body"
}
]
},
{
"comment": "braces",
"begin": "{",
"end": "}",
"patterns": [
{
"include": "#process-body"
}
]
},
{
"include": "source.nextflow-groovy#comments"
},
{
"include": "source.nextflow-groovy#support-functions"
},
{
"include": "source.nextflow-groovy#keyword"
},
{
"include": "source.nextflow-groovy#values"
},
{
"include": "source.nextflow-groovy#anonymous-classes-and-new"
},
{
"include": "source.nextflow-groovy#types"
},
{
"include": "source.nextflow-groovy#parens"
},
{
"include": "source.nextflow-groovy#closures"
},
{
"include": "source.nextflow-groovy#braces"
}
]
},
"workflow-def": {
"name": "workflow.nextflow",
"begin": "^\\s*(workflow)(?:\\s+(\\w+|\"[^\"]+\"|'[^']+'))?\\s*{",
"beginCaptures": {
"1": {
"name": "keyword.nextflow"
},
"2": {
"name": "constant.nextflow"
}
},
"end": "}",
"patterns": [
{
"include": "#workflow-body"
}
]
},
"workflow-body": {
"patterns": [
{
"include": "#implicit-variables"
},
{
"name": "constant.block.nextflow",
"match": "(?:take|main|emit):"
},
{
"name": "entity.name.function.nextflow",
"match": "(?<=[\\s\\.])(branch|buffer|close|collate|collect|collectFile|combine|concat|count|countBy|cross|distinct|dump|filter|first|flatMap|flatten|groupTuple|ifEmpty|join|last|map|max|merge|min|mix|multiMap|randomSample|reduce|set|splitCsv|splitFasta|splitFastq|splitText|sum|take|tap|toInteger|toList|toSortedList|transpose|unique|until|view)(?=[{\\(\\s])"
},
{
"comment": "Channel factory single line",
"match": "\\b((?:C|c)hannel\\.)((fromList|fromPath|fromFilePairs|fromSRA|from|of|empty|value|watchPath)\\W)?",
"captures": {
"1": {
"name": "keyword.nextflow"
},
"2": {
"name": "entity.name.function.nextflow"
}
}
},
{
"comment": "Channel factory multi-line",
"begin": "\\b((?:C|c)hannel)\\s*$",
"beginCaptures": {
"1": {
"name": "keyword.nextflow"
}
},
"end": "(^\\s*)(?:(\\.)(fromList|fromPath|fromFilePairs|fromSRA|from|of|empty|value|watchPath)\\W)?",
"endCaptures": {
"1": {
"name": "keyword.nextflow"
},
"2": {
"name": "keyword.nextflow"
},
"3": {
"name": "entity.name.function.nextflow"
}
}
},
{
"comment": "method call and parens",
"begin": "(\\w*\\()",
"beginCaptures": {
"1": {
"patterns": [
{
"include": "source.nextflow-groovy"
}
]
}
},
"end": "\\)",
"patterns": [
{
"include": "#workflow-body"
}
]
},
{
"comment": "braces",
"begin": "{",
"end": "}",
"patterns": [
{
"include": "#workflow-body"
}
]
},
{
"include": "source.nextflow-groovy#comments"
},
{
"include": "source.nextflow-groovy#support-functions"
},
{
"include": "source.nextflow-groovy#keyword"
},
{
"include": "source.nextflow-groovy#values"
},
{
"include": "source.nextflow-groovy#anonymous-classes-and-new"
},
{
"include": "source.nextflow-groovy#types"
},
{
"include": "source.nextflow-groovy#parens"
},
{
"include": "source.nextflow-groovy#closures"
},
{
"include": "source.nextflow-groovy#braces"
}
]
},
"include-statement": {
"patterns": [
{
"match": "^\\b(include)\\b",
"name": "keyword.nextflow"
},
{
"match": "\\b(from)\\b",
"name": "keyword.nextflow"
}
]
},
"implicit-variables": {
"patterns": [
{
"match": "(?<=[^\\.\\w]|^)(params|nextflow|workflow|launchDir|moduleDir|projectDir|workDir)\\b",
"name": "variable.language.nextflow"
}
]
}
}
}